IL_7SYX_010

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

7SYX|1|2|G|113, 7SYX|1|2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_010 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.2107

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7SYX|1|2|U|112
7SYX|1|2|G|113
7SYX|1|2|G|114
7SYX|1|2|U|115
*
7SYX|1|2|A|348
7SYX|1|2|A|349

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain J

eS8

Chain M

uS17