IL_7SYX_013

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYX|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_013 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1582

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYX|1|2|G|145
7SYX|1|2|G|146
7SYX|1|2|A|147
7SYX|1|2|U|148
7SYX|1|2|A|149
7SYX|1|2|A|150
7SYX|1|2|C|151
*
7SYX|1|2|G|167
7SYX|1|2|C|168
7SYX|1|2|U|169
7SYX|1|2|A|170
7SYX|1|2|A|171
7SYX|1|2|U|172
7SYX|1|2|A|173
7SYX|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24