IL_7SYX_054

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7SYX|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_054 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1994

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7SYX|1|2|G|952
7SYX|1|2|C|953
7SYX|1|2|U|954
7SYX|1|2|A|955
7SYX|1|2|G|956
*
7SYX|1|2|C|967
7SYX|1|2|U|968
7SYX|1|2|U|969
7SYX|1|2|G|970
7SYX|1|2|G|971
7SYX|1|2|A|972
7SYX|1|2|C|973
7SYX|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11