IL_7SYX_078

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UACGC*GCGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_078 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3747

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7SYX|1|2|U|1560
7SYX|1|2|A|1561
7SYX|1|2|C|1562
7SYX|1|2|G|1563
7SYX|1|2|C|1564
*
7SYX|1|2|G|1571
7SYX|1|2|C|1572
7SYX|1|2|G|1573
7SYX|1|2|C|1574
7SYX|1|2|G|1575

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain U

eS19