IL_7SYX_088

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_088 not in the Motif Atlas

Geometric match to IL_4E48_002

Geometric discrepancy: 0.0892

The information below is about IL_4E48_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7SYX|1|2|C|1739
7SYX|1|2|C|1740
7SYX|1|2|U|1741
*
7SYX|1|2|A|1793
7SYX|1|2|C|1794
7SYX|1|2|G|1795

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8