IL_7TM3_011
3D structure
- PDB id
- 7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- CCGG*CGGCG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TM3_011 not in the Motif Atlas
- Geometric match to IL_8CRE_101
- Geometric discrepancy: 0.3811
- The information below is about IL_8CRE_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68909.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
7TM3|1|K|C|180
7TM3|1|K|C|181
7TM3|1|K|G|182
7TM3|1|K|G|189
*
7TM3|1|K|C|252
7TM3|1|K|G|253
7TM3|1|K|G|254
7TM3|1|K|C|255
7TM3|1|K|G|256
Current chains
- Chain K
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain h
- eL35
- Chain j
- Ribosomal protein L37
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: