IL_7TM3_014
3D structure
- PDB id
- 7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 7TM3|1|K|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TM3_014 not in the Motif Atlas
- Geometric match to IL_1U9S_005
- Geometric discrepancy: 0.2301
- The information below is about IL_1U9S_005
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
7TM3|1|K|C|339
7TM3|1|K|C|340
7TM3|1|K|G|341
7TM3|1|K|G|342
*
7TM3|1|v|C|32
7TM3|1|v|G|33
Current chains
- Chain K
- 28S ribosomal RNA
- Chain v
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain j
- Ribosomal protein L37
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