3D structure

PDB id
7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.25 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
7TM3|1|K|C|340
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TM3_014 not in the Motif Atlas
Geometric match to IL_1U9S_005
Geometric discrepancy: 0.2301
The information below is about IL_1U9S_005
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

7TM3|1|K|C|339
7TM3|1|K|C|340
7TM3|1|K|G|341
7TM3|1|K|G|342
*
7TM3|1|v|C|32
7TM3|1|v|G|33

Current chains

Chain K
28S ribosomal RNA
Chain v
5.8S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain L
60S ribosomal protein L13
Chain N
Ribosomal protein L15
Chain j
Ribosomal protein L37

Coloring options:


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