IL_7TM3_069

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGCCCGAUGC*GGG

Length

13 nucleotides

Bulged bases

7TM3|1|K|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_069 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1935

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7TM3|1|K|C|1911
7TM3|1|K|G|1912
7TM3|1|K|C|1913
7TM3|1|K|C|1914
7TM3|1|K|C|1915
7TM3|1|K|G|1916
7TM3|1|K|A|1917
7TM3|1|K|U|1918
7TM3|1|K|G|1919
7TM3|1|K|C|1920
*
7TM3|1|K|G|2063
7TM3|1|K|G|2064
7TM3|1|K|G|2065

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain M

60S ribosomal protein L14

Chain O

uL13

Chain S

eL20

Chain f

eL33