3D structure

PDB id
7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.25 Å

Loop

Sequence
CGC*GGUG
Length
7 nucleotides
Bulged bases
7TM3|1|K|G|2343
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TM3_075 not in the Motif Atlas
Homologous match to IL_8C3A_061
Geometric discrepancy: 0.0553
The information below is about IL_8C3A_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_73554.3
Basepair signature
cWW-cWS-cWW
Number of instances in this motif group
10

Unit IDs

7TM3|1|K|C|2290
7TM3|1|K|G|2291
7TM3|1|K|C|2292
*
7TM3|1|K|G|2342
7TM3|1|K|G|2343
7TM3|1|K|U|2344
7TM3|1|K|G|2345

Current chains

Chain K
28S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain a
60S ribosomal protein L27a
Chain e
eL32
Chain r
eL28
Chain v
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


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