3D structure

PDB id
7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.25 Å

Loop

Sequence
UCAAAGU*AAUGAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TM3_105 not in the Motif Atlas
Homologous match to IL_8C3A_093
Geometric discrepancy: 0.1489
The information below is about IL_8C3A_093
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_36973.8
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

7TM3|1|K|U|3715
7TM3|1|K|C|3716
7TM3|1|K|A|3717
7TM3|1|K|A|3718
7TM3|1|K|A|3719
7TM3|1|K|G|3720
7TM3|1|K|U|3721
*
7TM3|1|K|A|3732
7TM3|1|K|A|3733
7TM3|1|K|U|3734
7TM3|1|K|G|3735
7TM3|1|K|A|3736
7TM3|1|K|A|3737
7TM3|1|K|G|3738

Current chains

Chain K
28S ribosomal RNA

Nearby chains

Chain A
Ribosomal protein L8
Chain i
60S ribosomal protein L36

Coloring options:


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