IL_7TM3_105

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_105 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1489

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7TM3|1|K|U|3715
7TM3|1|K|C|3716
7TM3|1|K|A|3717
7TM3|1|K|A|3718
7TM3|1|K|A|3719
7TM3|1|K|G|3720
7TM3|1|K|U|3721
*
7TM3|1|K|A|3732
7TM3|1|K|A|3733
7TM3|1|K|U|3734
7TM3|1|K|G|3735
7TM3|1|K|A|3736
7TM3|1|K|A|3737
7TM3|1|K|G|3738

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain i

60S ribosomal protein L36