IL_7TM3_107

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7TM3|1|K|A|3785, 7TM3|1|K|C|3791, 7TM3|1|K|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_107 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1024

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7TM3|1|K|C|3781
7TM3|1|K|C|3782
7TM3|1|K|A|3783
7TM3|1|K|A|3784
7TM3|1|K|A|3785
7TM3|1|K|U|3786
7TM3|1|K|G|3787
7TM3|1|K|C|3788
7TM3|1|K|C|3789
7TM3|1|K|U|3790
7TM3|1|K|C|3791
7TM3|1|K|G|3792
*
7TM3|1|K|C|3808
7TM3|1|K|G|3809
7TM3|1|K|C|3810
7TM3|1|K|G|3811

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain n

eL41