IL_7TM3_140

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7TM3|1|K|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_140 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2356

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7TM3|1|K|G|4680
7TM3|1|K|A|4681
7TM3|1|K|U|4682
7TM3|1|K|U|4683
7TM3|1|K|A|4684
7TM3|1|K|U|4685
*
7TM3|1|K|A|4705
7TM3|1|K|G|4706
7TM3|1|K|A|4707
7TM3|1|K|A|4708
7TM3|1|K|U|4709
7TM3|1|K|C|4710

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

uL13

Chain m

eL40