IL_7TM3_159
3D structure
- PDB id
- 7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TM3_159 not in the Motif Atlas
- Geometric match to IL_7A0S_007
- Geometric discrepancy: 0.1661
- The information below is about IL_7A0S_007
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7TM3|1|u|G|71
7TM3|1|u|U|72
7TM3|1|u|U|73
7TM3|1|u|A|74
7TM3|1|u|G|75
7TM3|1|u|U|76
7TM3|1|u|A|77
7TM3|1|u|C|78
*
7TM3|1|u|G|98
7TM3|1|u|G|99
7TM3|1|u|A|100
7TM3|1|u|A|101
7TM3|1|u|U|102
7TM3|1|u|A|103
7TM3|1|u|C|104
Current chains
- Chain u
- 5S ribosomal RNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain F
- 60S ribosomal protein L7
- Chain I
- 60S ribosomal protein L10
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- eL20
- Chain T
- eL21
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