IL_7TM3_175

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

7TM3|1|K|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_175 not in the Motif Atlas

Geometric match to IL_8P9A_328

Geometric discrepancy: 0.261

The information below is about IL_8P9A_328

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7TM3|1|K|G|4347
7TM3|1|K|A|4348
7TM3|1|K|C|4349
7TM3|1|K|C|4350
*
7TM3|1|K|G|4364
7TM3|1|K|C|4365

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain Q

eL18

Chain a

60S ribosomal protein L27a

Chain o

eL42