IL_7TOO_009

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_009 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.2737

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

7TOO|1|A25S|C|163
7TOO|1|A25S|A|164
7TOO|1|A25S|A|165
7TOO|1|A25S|C|166
*
7TOO|1|A25S|G|256
7TOO|1|A25S|U|257
7TOO|1|A25S|G|258

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL13

60S ribosomal protein L13-A

Chain AL35

60S ribosomal protein L35-A