IL_7TOO_011

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUC*GAGUG

Length

8 nucleotides

Bulged bases

7TOO|1|A25S|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_011 not in the Motif Atlas

Geometric match to IL_5TBW_011

Geometric discrepancy: 0.2765

The information below is about IL_5TBW_011

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.3

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

7TOO|1|A25S|U|177
7TOO|1|A25S|U|178
7TOO|1|A25S|C|179
*
7TOO|1|A25S|G|237
7TOO|1|A25S|A|238
7TOO|1|A25S|G|239
7TOO|1|A25S|U|240
7TOO|1|A25S|G|241

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL13

60S ribosomal protein L13-A

Chain AL35

60S ribosomal protein L35-A

Chain AL37

60S ribosomal protein L37-A