IL_7TOO_030

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_030 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1114

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7TOO|1|A25S|U|834
7TOO|1|A25S|G|835
7TOO|1|A25S|A|836
7TOO|1|A25S|A|837
7TOO|1|A25S|G|838
*
7TOO|1|A25S|U|855
7TOO|1|A25S|G|856
7TOO|1|A25S|G|857
7TOO|1|A25S|A|858
7TOO|1|A25S|G|859

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL19

60S ribosomal protein L19-A

Chain AL43

60S ribosomal protein L43-A