3D structure

PDB id
7TOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGUAU*AAG
Length
8 nucleotides
Bulged bases
7TOO|1|A25S|A|1103
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOO_036 not in the Motif Atlas
Geometric match to IL_5TBW_036
Geometric discrepancy: 0.232
The information below is about IL_5TBW_036
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_42230.1
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

7TOO|1|A25S|C|977
7TOO|1|A25S|G|978
7TOO|1|A25S|U|979
7TOO|1|A25S|A|980
7TOO|1|A25S|U|981
*
7TOO|1|A25S|A|1102
7TOO|1|A25S|A|1103
7TOO|1|A25S|G|1104

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL07
60S ribosomal protein L7-A
Chain AL18
60S ribosomal protein L18-A
Chain AL29
RPL29 isoform 1

Coloring options:


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