IL_7TOO_043
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUCCG*UGA
- Length
- 8 nucleotides
- Bulged bases
- 7TOO|1|A25S|C|1016, 7TOO|1|A25S|C|1017
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOO_043 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.3621
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
7TOO|1|A25S|U|1014
7TOO|1|A25S|U|1015
7TOO|1|A25S|C|1016
7TOO|1|A25S|C|1017
7TOO|1|A25S|G|1018
*
7TOO|1|A25S|U|1034
7TOO|1|A25S|G|1035
7TOO|1|A25S|A|1036
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL05
- RPL5 isoform 1
- Chain AL11
- RPL11A isoform 1
Coloring options: