3D structure

PDB id
7TOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UUCCG*UGA
Length
8 nucleotides
Bulged bases
7TOO|1|A25S|C|1016, 7TOO|1|A25S|C|1017
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOO_043 not in the Motif Atlas
Geometric match to IL_3TD0_005
Geometric discrepancy: 0.3621
The information below is about IL_3TD0_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

7TOO|1|A25S|U|1014
7TOO|1|A25S|U|1015
7TOO|1|A25S|C|1016
7TOO|1|A25S|C|1017
7TOO|1|A25S|G|1018
*
7TOO|1|A25S|U|1034
7TOO|1|A25S|G|1035
7TOO|1|A25S|A|1036

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL05
RPL5 isoform 1
Chain AL11
RPL11A isoform 1

Coloring options:


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