IL_7TOO_051
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7TOO|1|A25S|C|1196, 7TOO|1|A25S|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOO_051 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0707
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7TOO|1|A25S|G|1194
7TOO|1|A25S|A|1195
7TOO|1|A25S|C|1196
7TOO|1|A25S|A|1197
7TOO|1|A25S|C|1198
7TOO|1|A25S|C|1199
7TOO|1|A25S|A|1200
7TOO|1|A25S|C|1201
7TOO|1|A25S|A|1202
7TOO|1|A25S|A|1203
7TOO|1|A25S|A|1204
7TOO|1|A25S|A|1205
*
7TOO|1|A25S|U|1299
7TOO|1|A25S|G|1300
7TOO|1|A25S|A|1301
7TOO|1|A25S|A|1302
7TOO|1|A25S|A|1303
7TOO|1|A25S|A|1304
7TOO|1|A25S|U|1305
7TOO|1|A25S|G|1306
7TOO|1|A25S|G|1307
7TOO|1|A25S|A|1308
7TOO|1|A25S|U|1309
7TOO|1|A25S|G|1310
7TOO|1|A25S|G|1311
7TOO|1|A25S|C|1312
7TOO|1|A25S|G|1313
7TOO|1|A25S|C|1314
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL03
- RPL3 isoform 1
- Chain AL07
- 60S ribosomal protein L7-A
- Chain AL10
- RPL10 isoform 1
- Chain AL16
- 60S ribosomal protein L16-A
- Chain AL33
- 60S ribosomal protein L33-A
- Chain AL40
- Ubiquitin-60S ribosomal protein L40
Coloring options: