IL_7TOO_053
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 7TOO|1|A25S|U|1220, 7TOO|1|A25S|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOO_053 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.3631
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7TOO|1|A25S|U|1218
7TOO|1|A25S|C|1219
7TOO|1|A25S|U|1220
7TOO|1|A25S|A|1221
7TOO|1|A25S|G|1222
7TOO|1|A25S|A|1223
7TOO|1|A25S|C|1224
7TOO|1|A25S|A|1225
7TOO|1|A25S|G|1226
*
7TOO|1|A25S|C|1283
7TOO|1|A25S|C|1284
7TOO|1|A25S|G|1285
7TOO|1|A25S|A|1286
7TOO|1|A25S|A|1287
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL20
- 60S ribosomal protein L20-A
- Chain AL40
- Ubiquitin-60S ribosomal protein L40
- Chain ALP0
- 60S acidic ribosomal protein P0
Coloring options: