IL_7TOO_055

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7TOO|1|A25S|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_055 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.1652

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

7TOO|1|A25S|G|1262
7TOO|1|A25S|A|1263
7TOO|1|A25S|G|1264
7TOO|1|A25S|U|1265
7TOO|1|A25S|G|1266
*
7TOO|1|A25S|C|1275
7TOO|1|A25S|U|1276
7TOO|1|A25S|C|1277

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL12

Ribosomal protein L12