IL_7TOO_056

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

7TOO|1|A25S|G|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_056 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.0691

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

7TOO|1|A25S|C|1376
7TOO|1|A25S|G|1377
7TOO|1|A25S|U|1378
*
7TOO|1|A25S|A|1428
7TOO|1|A25S|G|1429
7TOO|1|A25S|U|1430
7TOO|1|A25S|G|1431

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL04

RPL4A isoform 1

Chain AL28

60S ribosomal protein L28

Chain AL32

RPL32 isoform 1