IL_7TOO_061

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

7TOO|1|A25S|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_061 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.1545

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7TOO|1|A25S|U|1501
7TOO|1|A25S|C|1502
7TOO|1|A25S|A|1503
7TOO|1|A25S|A|1504
7TOO|1|A25S|C|1505
*
7TOO|1|A25S|G|1513
7TOO|1|A25S|G|1514
7TOO|1|A25S|A|1515

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17-A

Chain AL19

60S ribosomal protein L19-A

Chain AL39

60S ribosomal protein L39