IL_7TOO_062
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 7TOO|1|A25S|A|1588, 7TOO|1|A25S|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOO_062 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1029
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
7TOO|1|A25S|C|1532
7TOO|1|A25S|U|1533
7TOO|1|A25S|A|1534
7TOO|1|A25S|A|1535
7TOO|1|A25S|G|1536
*
7TOO|1|A25S|C|1585
7TOO|1|A25S|G|1586
7TOO|1|A25S|A|1587
7TOO|1|A25S|A|1588
7TOO|1|A25S|A|1589
7TOO|1|A25S|G|1590
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL02
- 60S ribosomal protein L2-A
- Chain AL34
- 60S ribosomal protein L34-A
- Chain AL37
- 60S ribosomal protein L37-A
- Chain AL39
- 60S ribosomal protein L39
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