IL_7TOO_077

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

7TOO|1|A25S|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_077 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.114

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7TOO|1|A25S|A|1901
7TOO|1|A25S|G|1902
7TOO|1|A25S|U|1903
7TOO|1|A25S|C|1904
7TOO|1|A25S|G|1905
7TOO|1|A25S|G|1906
*
7TOO|1|A25S|C|2333
7TOO|1|A25S|U|2334
7TOO|1|A25S|G|2335
7TOO|1|A25S|U|2336

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AGR

ALS-FTD-associated dipeptide repeat protein, GR20

Chain AL03

RPL3 isoform 1

Chain AL23

60S ribosomal protein L23-A