IL_7TOO_086

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

7TOO|1|A25S|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_086 not in the Motif Atlas

Geometric match to IL_5TBW_087

Geometric discrepancy: 0.2445

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7TOO|1|A25S|G|2206
7TOO|1|A25S|A|2207
7TOO|1|A25S|A|2208
7TOO|1|A25S|U|2209
7TOO|1|A25S|G|2210
*
7TOO|1|A25S|C|2235
7TOO|1|A25S|G|2236
7TOO|1|A25S|C|2237

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain APTN

Transfer RNA; tRNA