IL_7TOO_089

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7TOO|1|A25S|A|2281, 7TOO|1|A25S|C|2287, 7TOO|1|A25S|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_089 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0821

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7TOO|1|A25S|C|2277
7TOO|1|A25S|C|2278
7TOO|1|A25S|A|2279
7TOO|1|A25S|A|2280
7TOO|1|A25S|A|2281
7TOO|1|A25S|U|2282
7TOO|1|A25S|G|2283
7TOO|1|A25S|C|2284
7TOO|1|A25S|C|2285
7TOO|1|A25S|U|2286
7TOO|1|A25S|C|2287
7TOO|1|A25S|G|2288
*
7TOO|1|A25S|C|2304
7TOO|1|A25S|G|2305
7TOO|1|A25S|C|2306
7TOO|1|A25S|G|2307

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL41

60S ribosomal protein L41-A