IL_7TOO_099

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_099 not in the Motif Atlas

Homologous match to IL_8C3A_108

Geometric discrepancy: 0.1245

The information below is about IL_8C3A_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7TOO|1|A25S|C|2666
7TOO|1|A25S|A|2667
7TOO|1|A25S|U|2668
*
7TOO|1|A25S|A|2686
7TOO|1|A25S|G|2687
7TOO|1|A25S|U|2688
7TOO|1|A25S|A|2689
7TOO|1|A25S|G|2690

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL05

RPL5 isoform 1

Chain AL11

RPL11A isoform 1

Chain AL21

60S ribosomal protein L21-A