IL_7TOO_120

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

7TOO|1|A25S|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_120 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.094

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

7TOO|1|A25S|A|3103
7TOO|1|A25S|U|3104
7TOO|1|A25S|U|3105
7TOO|1|A25S|A|3106
7TOO|1|A25S|U|3107
*
7TOO|1|A25S|A|3127
7TOO|1|A25S|G|3128
7TOO|1|A25S|A|3129
7TOO|1|A25S|A|3130
7TOO|1|A25S|U|3131

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9-A

Chain AL16

60S ribosomal protein L16-A

Chain AL40

Ubiquitin-60S ribosomal protein L40