IL_7TOO_122

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_122 not in the Motif Atlas

Geometric match to IL_5MWI_001

Geometric discrepancy: 0.1689

The information below is about IL_5MWI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7TOO|1|A25S|A|3168
7TOO|1|A25S|U|3169
7TOO|1|A25S|A|3170
*
7TOO|1|A25S|U|3280
7TOO|1|A25S|U|3281
7TOO|1|A25S|U|3282

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17-A

Chain AL33

60S ribosomal protein L33-A