IL_7TOO_129

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_129 not in the Motif Atlas

Homologous match to IL_8C3A_135

Geometric discrepancy: 0.1447

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7TOO|1|A25S|U|3300
7TOO|1|A25S|U|3301
7TOO|1|A25S|U|3302
7TOO|1|A25S|G|3303
*
7TOO|1|A25S|C|3311
7TOO|1|A25S|U|3312
7TOO|1|A25S|U|3313
7TOO|1|A25S|A|3314

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL17

60S ribosomal protein L17-A

Chain AL31

60S ribosomal protein L31-A