IL_7TOO_135

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_135 not in the Motif Atlas

Geometric match to IL_5TBW_135

Geometric discrepancy: 0.2087

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7TOO|1|A25S|A|3342
7TOO|1|A25S|G|3343
7TOO|1|A25S|A|3344
7TOO|1|A25S|G|3345
*
7TOO|1|A25S|C|3360
7TOO|1|A25S|G|3361
7TOO|1|A25S|A|3362
7TOO|1|A25S|U|3363

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19-A

Chain AL22

60S ribosomal protein L22-A