IL_7TOO_138
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 7TOO|1|A58S|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOO_138 not in the Motif Atlas
- Geometric match to IL_5TBW_145
- Geometric discrepancy: 0.1232
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7TOO|1|A58S|U|64
7TOO|1|A58S|A|65
7TOO|1|A58S|A|66
*
7TOO|1|A58S|U|93
7TOO|1|A58S|C|94
7TOO|1|A58S|G|95
7TOO|1|A58S|A|96
Current chains
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL26
- 60S ribosomal protein L26-A
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL37
- 60S ribosomal protein L37-A
Coloring options: