IL_7TOO_142
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CC*GUAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOO_142 not in the Motif Atlas
- Geometric match to IL_5TBW_374
- Geometric discrepancy: 0.1159
- The information below is about IL_5TBW_374
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_15052.2
- Basepair signature
- cWW-cWW-cWW-R
- Number of instances in this motif group
- 8
Unit IDs
7TOO|1|A5S|C|28
7TOO|1|A5S|C|29
*
7TOO|1|A5S|G|49
7TOO|1|A5S|U|50
7TOO|1|A5S|A|51
7TOO|1|A5S|G|52
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain AL05
- RPL5 isoform 1
- Chain AL11
- RPL11A isoform 1
Coloring options: