Motif IL_15052.2 Version IL_15052.2 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-2	1-3	1-6	3-6	4-5
1	IL_3RW6_001	3RW6	0.4167	0	Minor groove platform	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	U	53	A	54	A	55	U	56	*	A	7	A	8		ncSH	cWW		cWW
2	IL_3IWN_005	3IWN	0.1466	0	Minor groove platform	A	C-di-GMP riboswitch	A	51	A	52	A	53	C	54	*	G	71	U	72	ncSH		cWW	ncWS	cWW
3	IL_3MXH_005	3MXH	0.0000	0	Minor groove platform	R	c-di-GMP riboswitch	A	61	A	62	A	63	C	64	*	G	76	U	77	ncSH		cWW		cWW
4	IL_4LFB_049	4LFB	0.2661	1	Minor groove platform	A	SSU rRNA	C	1128	A	1130	G	1131	C	1132	*	G	1142	G	1143			cWW	ncWS	ncWW
5	IL_5J7L_052	5J7L	0.2473	0	Minor groove platform	AA	SSU rRNA	C	1129	A	1130	G	1131	C	1132	*	G	1142	G	1143	cSH		cWW		cWW
6	IL_5J7L_007	5J7L	0.3090	0	Minor groove platform	AA	SSU rRNA	U	70	A	71	A	72	C	73	*	G	97	A	98	ncSH		cWW	ncWS	cWW
7	IL_8C3A_145	8C3A	0.4587	0		3	5S rRNA	G	49	U	50	A	51	G	52	*	C	28	C	29			cWW	cWS	cWW
8	IL_5TBW_374	5TBW	0.4642	0	Minor groove platform	AS	5S rRNA	G	49	U	50	A	51	G	52	*	C	28	C	29			cWW	cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AAAC*GU	2
GUAG*CC	2
UAAU*AA	1
CCAGC*GG	1
CAGC*GG	1
UAAC*GA	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	4
UA*	2
CAG*	1
AG*	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	Updated, 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Minor groove platform (7)
(1)
Basepair signature: cWW-cWW-cWW-R
Heat map statistics: Min 0.10 | Avg 0.34 | Max 0.55

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