IL_7TOP_041

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_041 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3791

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7TOP|1|A25S|G|1005
7TOP|1|A25S|A|1006
7TOP|1|A25S|U|1007
7TOP|1|A25S|U|1008
7TOP|1|A25S|A|1009
*
7TOP|1|A25S|U|1041
7TOP|1|A25S|U|1042
7TOP|1|A25S|C|1043
7TOP|1|A25S|U|1044
7TOP|1|A25S|C|1045

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL05

RPL5 isoform 1

Chain AL10

RPL10 isoform 1