IL_7TOP_048
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 7TOP|1|A25S|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_048 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1084
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
7TOP|1|A25S|U|1167
7TOP|1|A25S|U|1168
7TOP|1|A25S|A|1169
7TOP|1|A25S|A|1170
7TOP|1|A25S|G|1171
*
7TOP|1|A25S|C|1328
7TOP|1|A25S|U|1329
7TOP|1|A25S|A|1330
7TOP|1|A25S|U|1331
7TOP|1|A25S|A|1332
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL07
- 60S ribosomal protein L7-A
- Chain AL18
- 60S ribosomal protein L18-A
- Chain AL32
- RPL32 isoform 1
- Chain AL33
- 60S ribosomal protein L33-A
Coloring options: