Loop IL_7TOP

General information

3D structure

PDB id: 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å

Loop

Sequence: GACACCACAAAA*UGAAAAUGGAUGGCGC
Length: 28 nucleotides
Bulged bases: 7TOP|1|A25S|C|1196, 7TOP|1|A25S|A|1302
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

IL_7TOP_052 not in the Motif Atlas
Geometric match to IL_5TBW_052: Geometric discrepancy: 0.0694; The information below is about IL_5TBW_052
Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: IL_53762.1
Basepair signature: cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group: 2

Unit IDs

7TOP|1|A25S|G|1194
7TOP|1|A25S|A|1195
7TOP|1|A25S|C|1196
7TOP|1|A25S|A|1197
7TOP|1|A25S|C|1198
7TOP|1|A25S|C|1199
7TOP|1|A25S|A|1200
7TOP|1|A25S|C|1201
7TOP|1|A25S|A|1202
7TOP|1|A25S|A|1203
7TOP|1|A25S|A|1204
7TOP|1|A25S|A|1205
*
7TOP|1|A25S|U|1299
7TOP|1|A25S|G|1300
7TOP|1|A25S|A|1301
7TOP|1|A25S|A|1302
7TOP|1|A25S|A|1303
7TOP|1|A25S|A|1304
7TOP|1|A25S|U|1305
7TOP|1|A25S|G|1306
7TOP|1|A25S|G|1307
7TOP|1|A25S|A|1308
7TOP|1|A25S|U|1309
7TOP|1|A25S|G|1310
7TOP|1|A25S|G|1311
7TOP|1|A25S|C|1312
7TOP|1|A25S|G|1313
7TOP|1|A25S|C|1314

Current chains

Chain A25S: 25S rRNA

Nearby chains

Chain A5S: 5S ribosomal RNA; 5S rRNA
Chain AL03: RPL3 isoform 1
Chain AL07: 60S ribosomal protein L7-A
Chain AL10: RPL10 isoform 1
Chain AL16: 60S ribosomal protein L16-A
Chain AL33: 60S ribosomal protein L33-A
Chain AL40: Ubiquitin-60S ribosomal protein L40

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Coloring options:
Nucleotide numbers

IL_7TOP_052
IL_5TBW_052 (superposition may be poor)