IL_7TOP_057
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 7TOP|1|A25S|G|1429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_057 not in the Motif Atlas
- Homologous match to IL_8C3A_061
- Geometric discrepancy: 0.052
- The information below is about IL_8C3A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7TOP|1|A25S|C|1376
7TOP|1|A25S|G|1377
7TOP|1|A25S|U|1378
*
7TOP|1|A25S|A|1428
7TOP|1|A25S|G|1429
7TOP|1|A25S|U|1430
7TOP|1|A25S|G|1431
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL04
- RPL4A isoform 1
- Chain AL28
- 60S ribosomal protein L28
- Chain AL32
- RPL32 isoform 1
Coloring options: