3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAUA*UGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOP_064 not in the Motif Atlas
Homologous match to IL_8C3A_070
Geometric discrepancy: 0.1505
The information below is about IL_8C3A_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15698.1
Basepair signature
cWW-tSH-cSH-cWW
Number of instances in this motif group
9

Unit IDs

7TOP|1|A25S|G|1618
7TOP|1|A25S|A|1619
7TOP|1|A25S|U|1620
7TOP|1|A25S|A|1621
*
7TOP|1|A25S|U|1824
7TOP|1|A25S|G|1825
7TOP|1|A25S|C|1826

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain A58S
5.8S ribosomal RNA; 5.8S rRNA
Chain AL38
RPL38 isoform 1

Coloring options:


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