IL_7TOP_066

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

7TOP|1|A25S|U|1629, 7TOP|1|A25S|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_066 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.2078

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7TOP|1|A25S|U|1627
7TOP|1|A25S|C|1628
7TOP|1|A25S|U|1629
7TOP|1|A25S|U|1630
7TOP|1|A25S|C|1631
*
7TOP|1|A25S|G|1811
7TOP|1|A25S|G|1812
7TOP|1|A25S|A|1813
7TOP|1|A25S|A|1814
7TOP|1|A25S|U|1815
7TOP|1|A25S|A|1816

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL27

60S ribosomal protein L27-A