3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UUAAC*GGAAGA
Length
11 nucleotides
Bulged bases
7TOP|1|A25S|G|1751
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOP_071 not in the Motif Atlas
Homologous match to IL_8C3A_077
Geometric discrepancy: 0.0743
The information below is about IL_8C3A_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69313.1
Basepair signature
cWW-tWH-tHH-tHS-cWW
Number of instances in this motif group
2

Unit IDs

7TOP|1|A25S|U|1694
7TOP|1|A25S|U|1695
7TOP|1|A25S|A|1696
7TOP|1|A25S|A|1697
7TOP|1|A25S|C|1698
*
7TOP|1|A25S|G|1747
7TOP|1|A25S|G|1748
7TOP|1|A25S|A|1749
7TOP|1|A25S|A|1750
7TOP|1|A25S|G|1751
7TOP|1|A25S|A|1752

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL34
60S ribosomal protein L34-A
Chain AL38
RPL38 isoform 1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1241 s