IL_7TOP_078

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7TOP|1|A25S|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_078 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0767

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7TOP|1|A25S|C|1918
7TOP|1|A25S|G|1919
7TOP|1|A25S|U|1920
7TOP|1|A25S|A|1921
7TOP|1|A25S|A|1922
7TOP|1|A25S|C|1923
*
7TOP|1|A25S|G|1928
7TOP|1|A25S|G|1929
7TOP|1|A25S|A|1930
7TOP|1|A25S|U|1931
7TOP|1|A25S|A|1932
7TOP|1|A25S|A|1933
7TOP|1|A25S|G|1934

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19-A

Chain AL41

60S ribosomal protein L41-A

Chain AL43

60S ribosomal protein L43-A