IL_7TOP_089

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7TOP|1|A25S|A|2281, 7TOP|1|A25S|C|2287, 7TOP|1|A25S|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_089 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0922

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7TOP|1|A25S|C|2277
7TOP|1|A25S|C|2278
7TOP|1|A25S|A|2279
7TOP|1|A25S|A|2280
7TOP|1|A25S|A|2281
7TOP|1|A25S|U|2282
7TOP|1|A25S|G|2283
7TOP|1|A25S|C|2284
7TOP|1|A25S|C|2285
7TOP|1|A25S|U|2286
7TOP|1|A25S|C|2287
7TOP|1|A25S|G|2288
*
7TOP|1|A25S|C|2304
7TOP|1|A25S|G|2305
7TOP|1|A25S|C|2306
7TOP|1|A25S|G|2307

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL41

60S ribosomal protein L41-A