IL_7TOP_098
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_098 not in the Motif Atlas
- Homologous match to IL_8C3A_109
- Geometric discrepancy: 0.1295
- The information below is about IL_8C3A_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7TOP|1|A25S|U|2718
7TOP|1|A25S|U|2719
7TOP|1|A25S|G|2720
7TOP|1|A25S|A|2721
*
7TOP|1|A25S|U|2735
7TOP|1|A25S|A|2736
7TOP|1|A25S|C|2737
7TOP|1|A25S|A|2738
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL05
- RPL5 isoform 1
- Chain AL18
- 60S ribosomal protein L18-A
- Chain AL21
- 60S ribosomal protein L21-A
- Chain AL29
- RPL29 isoform 1
- Chain AL42
- 60S ribosomal protein L42-A
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