IL_7TOP_103

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7TOP|1|A25S|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_103 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.1001

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7TOP|1|A25S|G|2828
7TOP|1|A25S|U|2829
7TOP|1|A25S|G|2830
*
7TOP|1|A25S|U|2858
7TOP|1|A25S|U|2859
7TOP|1|A25S|U|2860
7TOP|1|A25S|U|2861
7TOP|1|A25S|U|2862

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL10

RPL10 isoform 1