3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AUUAU*AGAAU
Length
10 nucleotides
Bulged bases
7TOP|1|A25S|A|3130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOP_118 not in the Motif Atlas
Homologous match to IL_8C3A_129
Geometric discrepancy: 0.1181
The information below is about IL_8C3A_129
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

7TOP|1|A25S|A|3103
7TOP|1|A25S|U|3104
7TOP|1|A25S|U|3105
7TOP|1|A25S|A|3106
7TOP|1|A25S|U|3107
*
7TOP|1|A25S|A|3127
7TOP|1|A25S|G|3128
7TOP|1|A25S|A|3129
7TOP|1|A25S|A|3130
7TOP|1|A25S|U|3131

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL09
60S ribosomal protein L9-A
Chain AL16
60S ribosomal protein L16-A
Chain AL40
Ubiquitin-60S ribosomal protein L40

Coloring options:


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