IL_7TOP_126

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_126 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.118

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7TOP|1|A25S|C|3235
7TOP|1|A25S|U|3236
7TOP|1|A25S|U|3237
7TOP|1|A25S|G|3238
*
7TOP|1|A25S|C|3249
7TOP|1|A25S|U|3250
7TOP|1|A25S|U|3251
7TOP|1|A25S|G|3252

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL16

60S ribosomal protein L16-A