IL_7TOP_131

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

7TOP|1|A25S|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_131 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0868

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

7TOP|1|A25S|U|3332
7TOP|1|A25S|G|3333
7TOP|1|A25S|U|3334
7TOP|1|A25S|A|3335
7TOP|1|A25S|A|3336
7TOP|1|A25S|G|3337
*
7TOP|1|A25S|C|3367
7TOP|1|A25S|U|3368
7TOP|1|A25S|G|3369
7TOP|1|A25S|A|3370
7TOP|1|A25S|G|3371

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL24

RPL24A isoform 1

Chain AL31

60S ribosomal protein L31-A